rs224135693 SNP Detail

Summary

• ID
  rs224135693
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41354445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACCTTGTT GGATGGTATG
  TGCAGGCTCT CCCACGTTAT TTTATGTAAG AGCCTAGTAG AATCATAACT GTGGGGAGGT
  GACGGGGAAA ATCACACACA TTCAGACAAC ACAAATTCCA AAAGGCCTTT CCAAAAGAGA
  CTAAGTCAAT TCCAAGTTAC AGATATCTTC ACTTTGTTGT GATCGATTTT TTTTGGGGGG
  R
  GGGGGATTTA ATGTCTGCTC CTGATGGATC TGTACGCATG TCAGGGAAGC TCAGGCGGTT
  TTCCTTGGTT CTTTATAGGA TAAGTCGTCC TACATGCTTA CATGTGGGCA TAGAATGAAA
  TGGGTGTACT CTATGGGACG TTTTTGCTGT GGATGAGCTA TTATAAACAC CCCAACTGTG
  TGATCCAACA TAAGCCATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss402481810	MGP_WTSI_19_41440496	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs224135693					SNP	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402481810	MGP_WTSI_19_41440496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41354445 () rs orientation: forward

Symbol	Name	Function Class
Pik3ap1	phosphoinositide-3-kinase adaptor protein 1	Intron
Rr405959	regulatory region 405959	1455 bp upstream
Rr547615	regulatory region 547615	133 bp distal
Rr547616	regulatory region 547616	371 bp proximal
Rr547617	regulatory region 547617	1137 bp proximal