rs224133237 SNP Detail

Summary

• ID
  rs224133237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGGGCAC TGATGGAGGT
  AGGGTGGGCG ACCCTATTTC ATCTCACAGC TCACATGGTG TCTGTGTCCC AGCACTGACA
  AGGGAAGCCA GGGGGGATTC AGGATGCCAG AGGCTTGTCC CAGAGAGCAG ATGTTGGAAG
  CAAGAGTGGC CTAGGCTAGG GAGATAGCTC ATTGTAGTGT GTTTGCTTAG CATTCACAAG
  R
  GCCTGGTTCT ATCCCAGAAT TGCAAATAAA AGATAGATAG ATAGATAGAT AGATAGATAG
  ATAGATAGAT AGATAGATAG ATAGATAGAT ACGTAGGTAG GTAGGTAGGT AGGTAGGTAG
  ATAGATAGAT AGATAGATAG ATAGATAGAT AGATAGATGG GACAGGACAG CAGCCAAGGG
  TCAGGGCTCA GGATTGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704311	CHEV_5_139828966	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224133237					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338767 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	Intron
Rr623254	regulatory region 623254	1605 bp distal
Rr623255	regulatory region 623255	1104 bp distal
Rr623256	regulatory region 623256	385 bp distal
Rr623257	regulatory region 623257	684 bp proximal
Tssr49499	transcription start site region 49499	389 bp downstream
Tssr49500	transcription start site region 49500	1197 bp upstream
Tssr49501	transcription start site region 49501	1229 bp upstream