rs224127820 SNP Detail

Summary

• ID
  rs224127820
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGGGGGA GAGAGGGAGA GAGAGAGAGA GAGAAATAGT GAGAAAGACA GAGAATGTGA
  TAAGGGAGAG TGAAAAGTAA AATAAATGTT TAAAATATAA AGGTGTTTAA CCCCAGGATA
  TGTGTCCTAA AGGATGTGGC TTTTCTCTGA AGGAACTTGA GAGATATGAG TGTTTACGCA
  R
  TCATCTGCTC TTAGGAAATT ACAGAGGTTT CCCTTCTCAT AATAGCTATG ATGTAGAAAA
  CCCATGACAG GAAGGACCTG CCCTCAAGAT GACAACTGCA TATCTGATGT TACAGGACAG
  ACATTTGTCA GACTGGCCCA AGAGAACAGC TACGAACATT GCCTGGACTC ACCATGATCG
  CCATGCTCAC AGTGCTGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380379559	MGP_WTSI_10_51200352	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs224127820					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379559	MGP_WTSI_10_51200352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356642 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	66 bp upstream
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	115 bp upstream
Rr431273	regulatory region 431273	within coordinates
Tssr93232	transcription start site region 93232	291 bp downstream
Tssr93233	transcription start site region 93233	267 bp upstream
Tssr93234	transcription start site region 93234	293 bp upstream
Tssr93235	transcription start site region 93235	586 bp upstream
Tssr93236	transcription start site region 93236	1072 bp upstream
Tssr93237	transcription start site region 93237	1111 bp upstream
Tssr93238	transcription start site region 93238	1135 bp upstream
Tssr93239	transcription start site region 93239	1160 bp upstream
Tssr93240	transcription start site region 93240	1177 bp upstream
Tssr93241	transcription start site region 93241	1199 bp upstream
Tssr93242	transcription start site region 93242	1239 bp upstream
Tssr97553	transcription start site region 97553	103 bp upstream