rs224122300 SNP Detail

Summary

• ID
  rs224122300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83434102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGGACG GCCCCACGCT
  CGCCCGACTG CCCCGGAGCC CGACCGACCC CCTTTCTCCT CCTCGGCTGC CTCTCAGGCC
  GAGGCAGGAC AATAGGGGAC ATCGCGCGTT TGCGTACCGA GTCAGCCTGA CCGGCAAGAA
  GTGGGTGCCC GAGGGCAGAG ACCGAGCGCC CGCTGCACGG CATCCGCATG AGGGTCACAA
  S
  CCAGCGCCCT GCCCTGGCCG ACCCTACGGC TCTGCCATCG CCAGCCTTCC AGGCGCTGCT
  CTCGGGCTCT GTTGCACATC TAAAACAAAG ACTAGTCCGA GACCCCCGCC CTGCCTCCCA
  GAGGAGAGGG AAGGGGCGCG TCGCAGAGAG GAACCCAGGC AGATTCGGGA TGGGCTCAGT
  CACCGAGGGC CCAAGTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369031911	MGP_WTSI_6_83407114	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224122300					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369031911	MGP_WTSI_6_83407114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83434102 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm67132	predicted gene, 67132			91 bp downstream
Rr632869	regulatory region 632869			238 bp distal
Rr632870	regulatory region 632870			95 bp distal
Rr632871	regulatory region 632871			450 bp proximal
Tet3	tet methylcytosine dioxygenase 3			Intron
				mRNA-UTR
Tssr61651	transcription start site region 61651			1648 bp upstream
Tssr61652	transcription start site region 61652			1608 bp upstream
Tssr61653	transcription start site region 61653			728 bp upstream
Tssr61654	transcription start site region 61654			699 bp upstream
Tssr61655	transcription start site region 61655			676 bp upstream
Tssr61656	transcription start site region 61656			596 bp upstream
Tssr61657	transcription start site region 61657			551 bp upstream
Tssr61658	transcription start site region 61658			314 bp upstream
Tssr61659	transcription start site region 61659			258 bp upstream
Tssr61660	transcription start site region 61660			60 bp downstream
Tssr61661	transcription start site region 61661			403 bp downstream
Tssr61662	transcription start site region 61662			1985 bp downstream