rs224058997 SNP Detail

Summary

• ID
  rs224058997
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163381220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCTAG GACGTAAAAA
  CCTTTCACAG TATCAAGTGG TTCCATTTGG TGTTAGCCAG AATGAACCTT CAGCTCGGTT
  TTCCATATGA AATTCAAAGA CCAAAGAGGA AAATGGCTTT TCTAAGGACC AGGCATGGCT
  AAGAACAAAT TGGGACAAGC TATCCAATGG TTTACATGGA ATGTTTGCTC AAATGAGAAA
  K
  TGTATCCCCT TTGGATAGAC CAGGTTCTGG GGCTTTGGAA CAAGGGCGGG ATTTCCACCC
  CCTGCACCAT CCCCCACCTC AGCCTCCTGA ACTAGAATAT TTGTGCAGTG AGTGACCTGT
  GCAACTAAAC ACAGTGATCC TGGCCTGTCT CCGAACGAAC TCCCAAATAC TTTACCCTGA
  TGACATCAGA CAAATCCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603595	CHEV_2_163365036	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224058997					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163381220 () rs orientation: forward

Symbol	Name	Function Class
Hnf4a	hepatic nuclear factor 4, alpha	Intron
Hnf4aos	hepatic nuclear factor 4 alpha, opposite strand	within coordinates
Rr569404	regulatory region 569404	within coordinates
Rr569405	regulatory region 569405	928 bp proximal
Rr569406	regulatory region 569406	1492 bp proximal