rs223982488 SNP Detail

Summary

• ID
  rs223982488
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89157562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTTGTC TTCAAGATAT
  TAAGAAATCC ATAAGTCTCT TCAGGTTAGA TCAAAGAGCA GCCAGCCCAC AGCCTCAGCC
  AAGTCTTGAT GGAAATGAGG CTGTGGCCCC AGACCCTGCT TTGTGCTGTC ATGAGAAGCA
  GCTCTCTGTC CAGGGTGCTT GTCCTTTAGA GCAGCAAGGT TCCCGCCCCC TCCCCCCCCC
  M
  CCTCCCTCTC CCGGTGGATG CTCCAAACTT TAGGAAACAC CCATTTTGGT CACTTTTGTA
  TACTCAGTAG TGCCTGAGAG TGGGAAGTAG GTTGGTTGAA TGAAAAAACT TATCCTTCAA
  CCCTTCTAGG ACAAAATCCT ACACATTTAG AGGCACCTAA AGGTTAGGGA ATAAGGCTCA
  GTAAAGATGA AGCCAAGCGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320836911	CHEV_3_89054177	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223982488					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89157562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13414	CpG island 13414	1184 bp proximal
Krtcap2	keratinocyte associated protein 2	526 bp downstream
Rr367466	regulatory region 367466	1040 bp upstream
Rr580001	regulatory region 580001	within coordinates
Rr580002	regulatory region 580002	79 bp proximal
Rr580003	regulatory region 580003	296 bp proximal
Rr580004	regulatory region 580004	340 bp proximal
Rr580005	regulatory region 580005	1210 bp proximal