rs223953643 SNP Detail

Summary

• ID
  rs223953643
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119468726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTCCAGG AGGCAACTGA
  CTCCCACAGC CTGAAATTCC ATTTCCTCAA TGAAGATGGA GTGTGGCTCT GGGGAGCCCA
  ACAAGACAGA AGCTTATATT TTAGATAACT TTCCCCAGAT GTCCACCCAA AGGAACCCCC
  AGTCCTAATA GCAAGACTAT AGACAGAACG TTCTCTTGCC CGCCACCCCC CCCCACCCCC
  M
  CCCCCCCGCA CCCGCCTTCC CTAATCCCTC AGTGCTTCCT TCAAACAGTG TCCATCTGCC
  CTAAAAAGGG ACCCAGCACC AGCCTTCCTT TCTTCCTTCC TTTCTTTGGT TAGCCCTGGC
  TGTCCTGGAA CTTGCTCTGT AGACCAGGCT GGTTTTGAAC TCAGAGATTC GTCTGCCTCT
  GCCTCCCAAA TTCTGGGATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	CZECHII/EiJ	JF1/MsJ	QSi3/Ianm
ss369848082	MGP_WTSI_6_119441783	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	CE/J	CZECHII/EiJ	JF1/MsJ	QSi3/Ianm
rs223953643					SNP	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369848082	MGP_WTSI_6_119441783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119468726 () rs orientation: forward

Symbol	Name	Function Class
Rr637698	regulatory region 637698	1388 bp distal
Rr637699	regulatory region 637699	1836 bp distal
Rr637700	regulatory region 637700	77 bp distal
Rr637701	regulatory region 637701	802 bp distal
Rr637702	regulatory region 637702	39 bp proximal
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron