rs223899887 SNP Detail

Summary

• ID
  rs223899887
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62422020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGTTG GCACAGTGAC
  AGATGGTTGA TATCAAGTCA GATCACACAG AAAACCTCTT TGAGCATTTA AGAAGATTCT
  TTTCAGGAGA GAAAACAGAC TTCTAGGTGC TTAAGGGTTT TGTTTCAGGT CACATACTAC
  ACAGCACGCT GCCCATCTCC AAAGAGGGTT TGCCAGCGTG TATTGATTGG CTCACCTGGG
  S
  CAATGACCTT GACCTAACTG TTGGGCCACT AGAATCTACT TTTTATTGTC TCTAGGTTAG
  CAGCAGCAAG GAACAATACA CAGATAAATA GCCTGGGATG TCATAGGAAA GATGGTGGTG
  GTCTTTGATA TTCTGAATCT AGCTTCTTTT TGATTTGCAG CTTCAAAGCT GGGTACACTT
  AGCCAGGTGT GGTGGTAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321142492	CHEV_4_62164817	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223899887					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62422020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14361	CpG island 14361	1273 bp distal
Hdhd3	haloacid dehalogenase-like hydrolase domain containing 3	1583 bp upstream
Rr593325	regulatory region 593325	1518 bp distal
Rr593326	regulatory region 593326	1017 bp distal
Rr593327	regulatory region 593327	1677 bp proximal
Tssr42008	transcription start site region 42008	1601 bp upstream
Tssr42009	transcription start site region 42009	1557 bp upstream
Tssr42010	transcription start site region 42010	1523 bp upstream