rs223891352 SNP Detail

Summary

• ID
  rs223891352
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167029668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACACAGC AAGTACATAA
  ACAAGGAGCC AGCCTGGTCC TCTCACCCGC TGTCCCGAGC CTTGGGGCAG ACCTGTCCTT
  ACCACTAGCC TTCCCTGTCT TTTGTCATCT CTTAAAATAC CTGTGGGTGC CTCAGCCTCT
  GCCAGGCGTG TCGGTAGGCT GTGTTTATAC CCTTCCTTAT GAGCAGAGTG GGGTTATAAT
  W
  CAGGGCTAGA TGTTACATCT GCAGGGCAGG CTATTCTAGT ATGTATCCAG GCCTGGAGGC
  ACCAAGACTA TCCAGCAAAG CTCGACTCTG TTCTCACCAA GGCCGTAGCA TTTTAGAGTT
  TTATAAACCA TTTCCCCCCA ACAAAGTAGG GGTACACCGT ACTGAATCAC ATGGGAAGGG
  TGCCTCTTAA GAGTAGTAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356500158	MGP_WTSI_2_167013248	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223891352					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	A	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356500158	MGP_WTSI_2_167013248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167029668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			1001 bp upstream
Cpgi12734	CpG island 12734			288 bp proximal
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			Intron
				Noncoding-Transcript-Variant
Rr570485	regulatory region 570485			446 bp proximal
Rr570486	regulatory region 570486			464 bp proximal
Rr570487	regulatory region 570487			1060 bp proximal
Rr570488	regulatory region 570488			1888 bp proximal
Tssr21792	transcription start site region 21792			1912 bp upstream
Tssr21793	transcription start site region 21793			1931 bp upstream
Tssr27748	transcription start site region 27748			876 bp downstream
Tssr27749	transcription start site region 27749			1023 bp downstream
Tssr27750	transcription start site region 27750			1039 bp downstream
Tssr27751	transcription start site region 27751			1081 bp downstream