rs223886894 SNP Detail

Summary

• ID
  rs223886894
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116645104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaagagagg ggagagaggg gaaagagagg
  gggagacgag agggggaggg aaagagagag aggaagaaga gaaaagagaa gagaagagaa
  gagaagagga ggggagggga ggggagggga ggggagggga ggggagggga ggggagggga
  R
  gggaggggag gggaggggGT AGGGAGAAAC AATAATCAGA GAGAAAGGGA GGAGACCAAA
  TGGAGCACAC ACTTGCAAGA CAGGTATGGG ACTAGTTTGT GGCATCTGAC TCATGGCCTG
  CCTTAGTTTA CAGTATCTCT ACTCTCCCTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321918460	CHEV_6_116618161	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223886894					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116645104 () rs orientation: forward

Symbol	Name	Function Class
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637228	regulatory region 637228	448 bp proximal
Rr637229	regulatory region 637229	1019 bp proximal
Rr637230	regulatory region 637230	1841 bp proximal
Tssr58382	transcription start site region 58382	1782 bp downstream
Tssr58383	transcription start site region 58383	1242 bp upstream
Tssr58384	transcription start site region 58384	1280 bp upstream
Tssr62604	transcription start site region 62604	224 bp downstream
Tssr62605	transcription start site region 62605	258 bp downstream