rs223880214 SNP Detail

Summary

• ID
  rs223880214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15166556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCTTC TTAGTTCCTC
  CCCCATCTCT TTTCTTTCAA GATGAGATTC ACTTTATCAA TAGGCTAGCA TGGAACTCTT
  GCTGCTCCTA CCTCAGTCTC TTTCTGACTG CTTCAGTACA GTTGTATGCC ACCTCTAATC
  TGGTAAGAGC ATGGTTTTTA AGAATACATT GTATCAGGCT GGAGAGGTGG CTCTGAGGTT
  M
  AGAGCACTGT CTGCTATTCC AGAGGTCCTG AGTTCAAGTC CCAGCAACCA CATAGTGGCT
  CACAACCATC TGGTGCCCTC TTCTGGCTTG CAGGCAAACA TGCAGGAAGA ATGCTGCATA
  CATAATAAAT AAATCTTTTT AAAAATACAT TCTATCTTAG GAATCACAAA GGAAAAAACT
  AAACAGATTA CATTAAAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321751533	CHEV_6_15116557	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223880214					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15166556 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626644	regulatory region 626644			70 bp proximal