rs223863958 SNP Detail

Summary

• ID
  rs223863958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19682571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAAAAC GATGGCTGTG
  CGCATGCGTA GAACGACCCG CGCCCCTAAC GTCTGAGTCC TGACTAGTGC GCATGCGCAG
  CTCCCTCTGT CAACCGAACT CCTGATTGAG ATGTGTTCAG TGTCAAGGGG CAGAACATTT
  CTTGTGTCCC TTCGATAGCT CAGCTGGTAG AGCGGAGGAC TGTAGCTAAC TCCCCGTTAG
  R
  AGACATCCTT AGGTCGCTGG TTCGACTCCG GCTCGAAGGA GACAGTAATG TTTTCTCCAT
  GCTTATGTGT TTAGACTTAC CGGTCTTGCC CGGGGCCCCA CTCTCAGCTA CTGTACTCGC
  TAACCATCTT GGCGGTTCGA GGACTTTCTC TCCCAAAAGG GCCTGTATTC TTCCGTACTC
  GTCAACCTTT TGCGACCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320679304	CHEV_3_19528407	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223863958					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19682571 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	within coordinates
Cpgi13003	CpG island 13003	within coordinates
Cpgi13004	CpG island 13004	1443 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	588 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	376 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	within coordinates
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	375 bp upstream
Rr574008	regulatory region 574008	within coordinates
Rr574009	regulatory region 574009	260 bp proximal
Rr574010	regulatory region 574010	1817 bp proximal
Tssr32702	transcription start site region 32702	262 bp downstream