rs223837356 SNP Detail

Summary

• ID
  rs223837356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155599793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAAAAA CAAAAACAAA
  CTAACAAGCA AACAAAAAAA GGGGAGCTGA AGAGATGACT CAGTGGTTAA AAGCACTGAC
  TGCTCTTCCA AAGATCCCAA ATTCAAATCC CAGCAACTGC ATGGTGGCTC ACAACCATCC
  ATAATGAGAT CTGATGCCCT CTTCTGGGGT GTACTTATGT ATAACAATAA ATAAATCTGA
  R
  AGAGAGAGAG AGAGAGAAAG AGAAAGAAAA CAGAAAAAGC AAAGACCTGA AAAGTCTGTG
  TCATTTCTTT GTCATTTCTG TGGTGGACTA CAACCATCTG TGATGGATCC GACATCCTCT
  TCTGGTGTGT CTGAAGAGAG TGACAGAGTA CTCACATACA TAAAATAAAA TAAATAAATA
  CATTTTTTAG AAGTTCGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	ST/bJ	SWR/J
ss356221049	MGP_WTSI_2_155583609	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	ST/bJ	SWR/J
rs223837356					SNP	G	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356221049	MGP_WTSI_2_155583609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155599793 () rs orientation: forward

Symbol	Name	Function Class
Rr568116	regulatory region 568116	1841 bp distal
Rr568117	regulatory region 568117	1929 bp distal
Rr568118	regulatory region 568118	702 bp distal