rs223834652 SNP Detail

Summary

• ID
  rs223834652
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:102344001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGTGTT ATCAGATTAA
  TTAAGTAATT TATGTGGCTA AATTTACATA TGAATATTAA ATATCAGGCT GGGCTTCTCT
  AATCAGACAG CCAGTGTTTT CAGGGTAACA CTTTGTTCCC AAAACATTCA GAAATATGCA
  AATTGGATTC TTTAATGAGG CTGATATTTA TGTAAGGGAG AAGTCTTCCA GCTAGGAAGA
  T
  GCCTTCCCAT GATATTTTTG TCTGACACCT AAAGCTATGC TAGATGCTTC CCTCTGGAGC
  TGCTCATTAT CAACAACATT ATTTATTTAT TTATTTTCCG CTTTCCATTC TGACTCTGTG
  ACAGTCGGTC TGGCTGTGGC GAGGTCATAA GATCTGCCCT CTGGTCCAAA TTCTGGGTTG
  CTATTTATTA ATAGTAAACC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321233804	CHEV_4_102159409	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223834652					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102344001 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde4b	phosphodiesterase 4B, cAMP specific			Intron
				Noncoding-Transcript-Variant
Rr596251	regulatory region 596251			1733 bp distal
Rr596252	regulatory region 596252			1786 bp distal
Rr596253	regulatory region 596253			1601 bp distal
Rr596254	regulatory region 596254			within coordinates
Rr596255	regulatory region 596255			516 bp distal
Rr596256	regulatory region 596256			1382 bp proximal