rs223791843 SNP Detail

Summary

• ID
  rs223791843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:8732442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT GGCCTGGCCG TGTGCCAGGG
  Y
  CGCGCCTGCA GCGCCGCCGG TGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss639930641	FVB_NJ_3_8667382	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	T	C	C	T	C	T	C	C	T	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs223791843					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	T	C	C	T	C	T	C	C	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639930641	FVB_NJ_3_8667382	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:8732442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12962	CpG island 12962	within coordinates
Gm64520	predicted gene, 64520	within coordinates
Hey1	hairy/enhancer-of-split related with YRPW motif 1	344 bp upstream
Rr573306	regulatory region 573306	841 bp distal
Rr573307	regulatory region 573307	217 bp distal
Rr573308	regulatory region 573308	within coordinates
Tssr32550	transcription start site region 32550	1583 bp upstream
Tssr32551	transcription start site region 32551	539 bp upstream
Tssr32552	transcription start site region 32552	404 bp upstream
Tssr32553	transcription start site region 32553	370 bp upstream
Tssr32554	transcription start site region 32554	336 bp upstream
Tssr32555	transcription start site region 32555	326 bp upstream
Tssr32556	transcription start site region 32556	86 bp upstream