rs223759257 SNP Detail

Summary

• ID
  rs223759257
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53132653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGGGGG AAGAGGAACT
  TTTTTTCCAG AAAGAGTCCA CAGTGTTCTA CCAACTTGTC AGGCTGCCAG AAGGATGAGA
  GTGAAGCCCA GATCATGGCG ATCAGTGGTG GATGGGACCA CACCTTGACC ATGACCTCTT
  CGATGAGCAC ATGCTTAGCT CTCTATTTCA ACTTCAGTTT CACTTCAGGA CCCAGGACAT
  R
  GACTTGGGGG GCGGGGTCCA GAATCTCTCT TCCCCTCTTC CCATCGAATA TGTCTCCTTT
  CCCTGCTTTC CACAGTGAAG TTGGCTCTCG ATTGGCTTGC TGAGGATCCT TGGTGACCAA
  AGCTGACTTA GGTCACAGGC TGTGATCCCC CAATTCAATA ACAAAATTCT CTTATCAAAG
  AGAAAGAACC CAACTTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320767073	CHEV_3_53029154	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223759257					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53132653 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576663	regulatory region 576663			431 bp proximal