rs223739956 SNP Detail

Summary

• ID
  rs223739956
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:100524074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAATGAA AACAAAGGCG
  GGGCACCGGC TGGCCCAGCT CTGCCCTTGC CACGTTTTGT GAAGGAGGCG AATGGGAAAG
  GTGGTCCAGC CAGAAGAGGA CTGGCGCGGC CCTGTCCTAG TCAGGACAGG ATGAATCAGC
  GGCCGGCCGG AGTCCTCTTC TCAGAGAAAC AGGATTGAGA GAGACAGTGT GTCCCTGTGT
  K
  AAGGTTTCGA AGAAGAACAA ATGAGATAAG TGTGAAAGTG TCTGAAATGT GTGCGGCACG
  CTCTTCCAGA GAAGTAGCTC TAAATGAGAA AGCAGTGGGA GCAGGGAGGT ATGAGACTCG
  GGTCCCCAGG AAGGAAATGG GACCTAGAGG CTAGAAGGTT CATTCACTGC TAGAATGAGG
  GTCAAGGGTG TCTCTGTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392224859	MGP_WTSI_14_100685857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	G	T	T	T	G	G	G	T	T	G	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223739956					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	G	T	T	T	G	G	G	T	T	G	T	G	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392224859	MGP_WTSI_14_100685857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:100524074 () rs orientation: forward

Symbol	Name	Function Class
Gm41231	predicted gene, 41231	within coordinates
Klf12	Kruppel-like transcription factor 12	Intron
Rr496738	regulatory region 496738	1970 bp distal
Rr496739	regulatory region 496739	72 bp distal
Rr496740	regulatory region 496740	within coordinates
Tssr126898	transcription start site region 126898	1446 bp downstream
Tssr130014	transcription start site region 130014	1949 bp upstream
Tssr130015	transcription start site region 130015	1910 bp upstream
Tssr130016	transcription start site region 130016	1789 bp upstream
Tssr130017	transcription start site region 130017	1759 bp upstream
Tssr130018	transcription start site region 130018	1696 bp upstream
Tssr130019	transcription start site region 130019	1646 bp upstream