rs223729387 SNP Detail

Summary

• ID
  rs223729387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152423912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCCTTGA AGGCGGCGGG
  AAGCGCGCGC CGCGGGCGGG GCGAGGACGG GCCGCGCGTG GGGAGCTGGC GATGCCCGAG
  CCGGGGAGCG CGGGCTCGGC TCCCGGCGCC TGACAGTCGC TCCCCAGCAC TTTGCCCAGG
  CCGCCCTGGG TTCTTTGCGC CCTGGTGCCC GCCGGGTTCC CAGCCCACCC TGCTTCCCTG
  Y
  CTGTGGGCCT GACGCCCCAG GGCCACCGCC CCTGCCCTTG CCAGCTGCGG CTCAGAATTC
  AGCCTCCTTC GTGTTTGTGC CTCAGGGGTT ACCTTGCAGG ATTTTTCAGT TAACTGCGCC
  CGTCCTGGCA GGGCCTCACC CTGTCACCTG CCCTCCCTCC CTTCTGAGGG GTATCACTTC
  TTAGCTTCCC AAGTCCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321434230	CHEV_4_151713564	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223729387					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152423912 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Intron
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	558 bp distal
Rr605853	regulatory region 605853	within coordinates
Rr605854	regulatory region 605854	1509 bp proximal
Tssr40549	transcription start site region 40549	746 bp downstream
Tssr40550	transcription start site region 40550	693 bp downstream
Tssr40551	transcription start site region 40551	610 bp downstream
Tssr40552	transcription start site region 40552	488 bp downstream
Tssr40553	transcription start site region 40553	457 bp downstream