rs223705398 SNP Detail

Summary

• ID
  rs223705398
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119457498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGCAGCTGT CGCCACCTCT CGGATGTGGG
  CATCGGGCAC CTGGCCGGCA TGACGCGCAG CGCTGCCGAG GGCTGCCTGG GCCTGGAGCA
  GCTCACTCTT CAGGACTGCC AGAAACTCAC GGATCTTTCC CTGAAGCACA TCTCGCGAGG
  R
  CTGACGGGCC TCCGGCTCCT CAACCTCAGC TTCTGCGGCG GCATCTCGGA CGCGGGCCTT
  CTGCACCTGT CGCACATGGG CAGCCTGCGC AGCCTGAACC TGCGCTCCTG CGACAACATC
  AGCGACACCG GCATCATGCA TCTGGCCATG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321928129	CHEV_6_119430555	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223705398					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119457498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	within coordinates
Fbxl14	F-box and leucine-rich repeat protein 14	Coding-Synonymous
Rr637691	regulatory region 637691	859 bp distal
Rr637692	regulatory region 637692	123 bp distal
Rr637693	regulatory region 637693	1313 bp proximal
Tssr58502	transcription start site region 58502	1035 bp downstream
Tssr58503	transcription start site region 58503	1007 bp downstream
Tssr58504	transcription start site region 58504	990 bp downstream
Tssr58505	transcription start site region 58505	742 bp downstream
Tssr58506	transcription start site region 58506	845 bp upstream
Tssr58507	transcription start site region 58507	923 bp upstream
Tssr58508	transcription start site region 58508	983 bp upstream
Tssr58509	transcription start site region 58509	1008 bp upstream
Tssr58510	transcription start site region 58510	1401 bp upstream
Tssr62722	transcription start site region 62722	43 bp upstream
Tssr62723	transcription start site region 62723	1020 bp downstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron