rs223689100 SNP Detail

Summary

• ID
  rs223689100
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138042002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTGCACT ATACATTTCA
  CATTTAACAC TATATAAAAT GAATTTAAGT ACTTTTAATT AACACTATAT AAAATGAATT
  CAAGTACTTT TAAACAGAAA AAAAAGGGTG GAATTTCTTA TCTAATGTAA TTGTGTCAAG
  TGTGAGAAAC AAATGCCTCC TAATGAGCCC CTCCGTTAGG AGGAACCACC TCAGAATCAC
  T
  TGACAGTCTG TGGAAAGGCA GTGTCCTCAC AGTGCCTGGC ATCAGATGCT GCTTCTGCAG
  CCTCTCATTA CTGTACTGTG AAGTGAGAAT CCACCCCCAA CTTCCTTCAA GGTCAAACTT
  TGAACTTTGC AAGGAGAATG CTCGCTTGAC ACAACTTCCC ATAATATTAT TAGGCAATTG
  TTTTACTAGC ATCCTTGGCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359907661	MGP_WTSI_3_137999205	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223689100					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359907661	MGP_WTSI_3_137999205	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138042002 () rs orientation: forward

Symbol	Name	Function Class
Rr586126	regulatory region 586126	29 bp proximal