rs223679415 SNP Detail

Summary

• ID
  rs223679415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152079770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGAACA TCGCAGGGGG
  GGAGGGGGGA TCAGGGCCTC GGACCGGAGT GCGGGGCGGC GCCGCCGCGG CGGCCAGGGA
  CCCGCCCTCC CTCCCGGAGC AGATGGCGCG CGACGCCCGC CCGCGCAGGC CCCGGAAGGT
  GCGGGGCCCA CCCGTGGGGT GCGGGACGCC CGCGGGTCCC GGGTGGGTGT CCCGGCGCCA
  Y
  GCAGGCCCCG ACGCCTCCCG CCCGCAGCTG CGACACGGTG GACCCCTCGG GCCCCGCCCC
  GCCCCCGCCG CACACCCCGC ACCGCGACCC CTGCCCCGAG GCGCTGCGCG GGGGCCGCTC
  CCCGGAAGGA GGGGGAGGGG CGGCGCGGGA GACCGGCTCC GGAGTACCGA CCCCCCGGAC
  GCGGGCGCCG TGGGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363702606	MGP_WTSI_4_151369422	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs223679415					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363702606	MGP_WTSI_4_151369422	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152079770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15382	CpG island 15382	within coordinates
Gm69399	predicted gene, 69399	820 bp upstream
Phf13	PHD finger protein 13	Intron
Rr398892	regulatory region 398892	875 bp upstream
Rr605702	regulatory region 605702	330 bp proximal
Rr605703	regulatory region 605703	831 bp proximal
Rr605704	regulatory region 605704	935 bp proximal
Rr605705	regulatory region 605705	1409 bp proximal
Tssr44799	transcription start site region 44799	800 bp downstream