rs223631489 SNP Detail

Summary

• ID
  rs223631489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115674088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cagcctagc aaggctggct gtgaccatcc
  ggatgcttga gcagagccac ctgctgtgct gctcctttga tgtgctacta cctgcctgag
  gctcaacctg ccagaggcca aactggttct cttccaagaa tcttcccgga gttaacactg
  Y
  gatcttccca ctaaaaggct gacctatcta cttcaaagga actttgcttg gccagggaca
  ggcctcccct tttctttttc tttttctttt tctttttctt ttttttcctt tttttttttg
  agtacactct cgctgtcttc aggcacacca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321916393	CHEV_6_115647145	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223631489					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115674088 () rs orientation: forward

Symbol	Name	Function Class
Rr379973	regulatory region 379973	645 bp upstream
Rr637025	regulatory region 637025	1403 bp distal
Rr637026	regulatory region 637026	205 bp distal
Rr637027	regulatory region 637027	486 bp proximal
Rr637028	regulatory region 637028	1660 bp proximal
Rr637029	regulatory region 637029	1756 bp proximal
Rr637030	regulatory region 637030	1990 bp proximal