rs223623682 SNP Detail

Summary

• ID
  rs223623682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9882977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTGCTCT TCCGATCACC
  TGCAAGGGAG AGAAAGAGAG ACCTGAATGA GGTGTAAGAA CTTTTAACAC CTGAAATTCT
  GGAGGGCACT AGGTCTTCGC AAGCTTCCTG CAGGGCCGAC TCACCCGGGA CGTGCACACG
  CACGCGAAGA CCCGGAGGGA AAGAAGCCAA GCTCCGCAGC ACACCTCCGA CAGCCAGGCT
  Y
  GCAGGAGCCC AGGACTGACT AAGCAATTAA AACTTGGGGA CAAGTCCTCC CTGGAGGACA
  CCGGCCCCAG GATCTTTCCA ACCACTACAA ATCCTCCAAA AGGAGAAAGC TGAGCTTTTA
  GTTTACAAAA AACCAAACAA ACAAACCCCC AAACACACAC ACACAAACAG TCCCTCCAAG
  AGGAGGGAGT GATATCAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353056027	MGP_WTSI_2_9799793	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223623682					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353056027	MGP_WTSI_2_9799793	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9882977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			448 bp distal
Cpgi11184	CpG island 11184			within coordinates
Gata3	GATA binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			900 bp distal
Rr551593	regulatory region 551593			424 bp proximal
Rr551594	regulatory region 551594			1593 bp proximal
Rr551595	regulatory region 551595			1925 bp proximal
Tssr16062	transcription start site region 16062			1581 bp upstream
Tssr22554	transcription start site region 22554			707 bp upstream
Tssr22555	transcription start site region 22555			316 bp upstream
Tssr22556	transcription start site region 22556			279 bp upstream
Tssr22557	transcription start site region 22557			150 bp upstream
Tssr22558	transcription start site region 22558			within coordinates
Tssr22559	transcription start site region 22559			194 bp downstream
Tssr22560	transcription start site region 22560			272 bp downstream
Tssr22561	transcription start site region 22561			301 bp downstream
Tssr22562	transcription start site region 22562			414 bp downstream
Tssr22563	transcription start site region 22563			1371 bp downstream
Tssr22564	transcription start site region 22564			1397 bp downstream
Tssr22565	transcription start site region 22565			1423 bp downstream