rs223612288 SNP Detail

Summary

• ID
  rs223612288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109334822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACGAAACG GGAAAAAAAA
  AAAAAACGGA AAGAAGAAAT CTCTAATCTC ATTCAAAATA CTGCCCCTCT TTTATAAATT
  CTAAATCCCA AAATGGCCAA AGTGCTTCTA GTCCTCTCAA AGACTGTTCT CGCTGGCTGA
  GATTTCCACA GACAGACAGT ATTCCTGACC TCTTACCTCT CGCTGGGCTA ATCATTATCC
  Y
  CACCAGTCCT TCGTGGACTC CATTTCATTT CCCTTGAAAA TCTTTTTCTG CTTCTCCAGT
  CTGGGTTAGT CACCTACTCA GAGTTCCCAG TCAGGGCCTT TCTGTCAGGT TGATCAAGCT
  GAGTTCTCTG TCCCTTCCCT GTGTAAGGCC TGGCATGTTG CCTAAGGTAG TAGAGTCTTT
  CCTTGGCTGA ATGAACAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362802688	MGP_WTSI_4_109150230	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223612288					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362802688	MGP_WTSI_4_109150230	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109334822 () rs orientation: forward

Symbol	Name	Function Class
Rnf11	ring finger protein 11	Intron
Rr597332	regulatory region 597332	214 bp distal
Rr597333	regulatory region 597333	775 bp distal
Tssr38352	transcription start site region 38352	1775 bp downstream
Tssr38353	transcription start site region 38353	1724 bp downstream
Tssr42763	transcription start site region 42763	1336 bp upstream
Tssr42764	transcription start site region 42764	1188 bp upstream
Tssr42765	transcription start site region 42765	1148 bp upstream
Tssr42766	transcription start site region 42766	1129 bp upstream
Tssr42767	transcription start site region 42767	1017 bp upstream
Tssr42768	transcription start site region 42768	960 bp upstream
Tssr42769	transcription start site region 42769	898 bp upstream