rs223596002 SNP Detail

Summary

• ID
  rs223596002
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119823630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATATGT TAATGTCTAT
  ATGAATATTT TTCATGTATG TAGGTCACAC ATGCTGGGCG TGGTGGCACA TGACTTTAAT
  CCCAGCACTC GGGAGGCAGA GGCAGACAGA TTTCTGAGTT CGAGCCAGCC TGGTCTACAA
  AGTGAGTTCC AGGACAGACA GGGCTACACA GAGAAACACT GTCTCGAAAA ACCAAAAAAA
  M
  AAAAAAAACA AAAAAAACAA AAAGAAGAGG GTCACACATA CATGGCAACA CAGTACAACT
  TGCTGGTCTA TGTTCTTACC TTCAACTACA TGGGCCCCAG GGATTAAAGT CAAATCATTA
  AGGTTAGCAT CTCATTCTTT TACCTACTAA GTCTCCTCGA CAGCCTGGGT TGGGTTTTAT
  TTCACTTTCA GTTATAGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	RF/J	RIIIS/J	SWR/J
ss355439748	MGP_WTSI_2_119818885	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	A	A	C	C	C	C	C	C	A	A	A	A	C	A	A	C	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	RF/J	RIIIS/J	SWR/J
rs223596002					SNP	A	C	A	A	C	C	C	C	C	C	A	A	A	A	C	A	A	C	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355439748	MGP_WTSI_2_119818885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119823630 () rs orientation: forward

Symbol	Name	Function Class
Mapkbp1	mitogen-activated protein kinase binding protein 1	Intron
Rr563617	regulatory region 563617	402 bp distal