rs223574303 SNP Detail

Summary

• ID
  rs223574303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34850553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCATTC CCTTAACTCC
  GTCCTCAGCC TGACCAGCAA CCCCCTGCAC CCCACATGTC CTTTCCTTTT CCGACTGGGA
  CACAAGGGAA GCACCCAACC TTCTGGATCC TTTTCTCTTG TCCTAGACGG GCGCCCCCCC
  CCCCCCACTC CAGCTCATCT CCCAGCTCCT GCTACCAGCA TTAGAATACT CCCACACGGC
  Y
  GTGGGCTAAG ACAACAGGCA CTGCTGCTCT GGTGCTACCT GTAAAGTGGT TTGTTTTTCT
  CAGTACTGGG ATCAGACCCA AGGCTGCGTA CAAGTGCTTG CTAACCAAGC CACAGTTCCA
  GCCTCGTTTT AAGTACTTTA ACAAACATTT TGTCAATATT TCCCTCCAGT CTTTGGAGAC
  CCTCCCCTAC TCTATAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353605798	MGP_WTSI_2_34816061	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223574303					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353605798	MGP_WTSI_2_34816061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34850553 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1906 bp downstream
Rr555567	regulatory region 555567			1470 bp distal
Rr555568	regulatory region 555568			within coordinates
Rr555569	regulatory region 555569			984 bp proximal
Rr555570	regulatory region 555570			1034 bp proximal
Rr555571	regulatory region 555571			1805 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr17439	transcription start site region 17439			1672 bp downstream
Tssr17440	transcription start site region 17440			461 bp upstream
Tssr17441	transcription start site region 17441			860 bp upstream
Tssr17442	transcription start site region 17442			1142 bp upstream
Tssr17443	transcription start site region 17443			1161 bp upstream
Tssr17444	transcription start site region 17444			1178 bp upstream
Tssr17445	transcription start site region 17445			1343 bp upstream
Tssr23671	transcription start site region 23671			1909 bp upstream
Tssr23672	transcription start site region 23672			1798 bp upstream
Tssr23673	transcription start site region 23673			1014 bp downstream
Tssr23674	transcription start site region 23674			1210 bp downstream
Tssr23675	transcription start site region 23675			1248 bp downstream
Tssr23676	transcription start site region 23676			1261 bp downstream
Tssr23677	transcription start site region 23677			1279 bp downstream
Tssr23678	transcription start site region 23678			1412 bp downstream