rs223559137 SNP Detail

Summary

• ID
  rs223559137
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136025242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGATTGA AGCCAGCCAG
  GTCTACATAG TTCTAGGACA GCCAGGACTA CAAACGAAAC AACTTTCTCA AAAAACAAAA
  ACAAAAACAA AAACAAAAAC AAGAGAGAGA GAGAGAGAGA GAGAGAGGGT TCAGCGGCTG
  TTCTTCCAGA GTTTCTGAGT TCAATTCCCA GCAACCACAT GGTGGCTCAC AACCATCTGT
  W
  ATGAGATCTG ACGCCCTCTT CTAGTGTGTC TGAGGACAGC AACAGTGTAC TCACATATAT
  AAAACAAATA AATAAATCTT AAAAAAAAAA GAAGAAGAAG AAAGGAAAGA AGCGAAAAGA
  AGAAGAAAAC TTACTGCTCT TTCAGAGGTC CTGGCTTCTG TTCTCAGCAT CCACATGGGA
  TTACTGGCAC CCACACTTCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
ss363388197	MGP_WTSI_4_135853846	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	RIIIS/J	SEA/GnJ	SPRET/EiJ
rs223559137					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363388197	MGP_WTSI_4_135853846	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136025242 () rs orientation: forward

Symbol	Name	Function Class
Rr602345	regulatory region 602345	1086 bp distal