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rs223559137 SNP Detail
Summary
  • ID
    rs223559137
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr4:136025242 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGAGATTGA AGCCAGCCAG
    GTCTACATAG TTCTAGGACA GCCAGGACTA CAAACGAAAC AACTTTCTCA AAAAACAAAA
    ACAAAAACAA AAACAAAAAC AAGAGAGAGA GAGAGAGAGA GAGAGAGGGT TCAGCGGCTG
    TTCTTCCAGA GTTTCTGAGT TCAATTCCCA GCAACCACAT GGTGGCTCAC AACCATCTGT
    W
    ATGAGATCTG ACGCCCTCTT CTAGTGTGTC TGAGGACAGC AACAGTGTAC TCACATATAT
    AAAACAAATA AATAAATCTT AAAAAAAAAA GAAGAAGAAG AAAGGAAAGA AGCGAAAAGA
    AGAAGAAAAC TTACTGCTCT TTCAGAGGTC CTGGCTTCTG TTCTCAGCAT CCACATGGGA
    TTACTGGCAC CCACACTTCG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
B10.RIII-H2 H2-T18/(71NS)SnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
DBA/1J
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NZO/HlLtJ
RIIIS/J
SEA/GnJ
SPRET/EiJ
ss363388197 MGP_WTSI_4_135853846 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
B10.RIII-H2 H2-T18/(71NS)SnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CZECHII/EiJ
DBA/1J
JF1/MsJ
KK/HlJ
LP/J
MA/MyJ
MOLF/EiJ
NZO/HlLtJ
RIIIS/J
SEA/GnJ
SPRET/EiJ
rs223559137 SNP A A A A A A A A A A A A A A A A A A A A A A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363388197 MGP_WTSI_4_135853846 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:136025242 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr602345 regulatory region 602345 1086 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory