rs223558300 SNP Detail

Summary

• ID
  rs223558300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149088090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGTAT CCAGGTTCAG
  TTTGTAGCAC CCATGGTGGC TCATAGCTAT TCCTACAGTT CCAGTGGATT GAGAGCCTTT
  TTCTGACCTC CATACATACC ACTCATATAC ATGACACATA TAGATGCAGG CAGGCAGAAC
  ACCCATAAAC ATAACATAAA ATAAATCTAA AACAACAAAA ACAAAAATCC TGAGTTTCAG
  Y
  CAACGTGACA CAAGCTAGAG CTACCTGGAA GGAGGAGCCT CAACTGAGAA AGTGCCTCCA
  TCAGACTGAC CTGTAAACAA ATCTATAGGG TATTTTCTGA TTAATGTTTG ACAGGGGAGG
  GCCCAACCCA CTGTGATTGT TCTAACCCCG GGAGGGTGGT CCTAAGTGGT AAGAAAGCAG
  ACTGAGAAAC CCACGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321424163	CHEV_4_148377742	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223558300					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149088090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm42351	predicted gene, 42351			within coordinates
Pex14	peroxisomal biogenesis factor 14			Intron
				Noncoding-Transcript-Variant
Rr604816	regulatory region 604816			601 bp distal