rs223539629 SNP Detail

Summary

• ID
  rs223539629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139425174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTCATCC CGTGTTCTCT GGAACATTTT
  TATGGCCCTT TCCAGGCAGG GATGTGACGC CCAGGAACAA GAGCCGAGTT CCCAGCCCCA
  GCCTGGAGGA TGGGGGGAGG CCCATCCATC TTTCCAGCTG GCGGGCCCCT TGTGGGAAAG
  R
  CCACTGGGCC GCTGGGCCGG GGAGGGGGTT GGGGACACCT GCTGTGGTCA TTCTTCCTAA
  GCTCTCTGCA GAGGTGGTGA CCGGCTGGGG GCAGACAGGG ACCTTCTGCC ACAGGCACAC
  ACTCTGATCC TGGCTGACAT CACCCAAGGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321383611	CHEV_4_139253778	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223539629					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139425174 () rs orientation: forward

Symbol	Name	Function Class
Rr603286	regulatory region 603286	within coordinates
Rr603287	regulatory region 603287	781 bp proximal