rs223520797 SNP Detail

Summary

• ID
  rs223520797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106718094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATTGCT CTCTCAGAAG
  ACCTGGGTTT GAGTCCACAT GGTGGTTCTC AACCAAATAC CCATATAGAT AAAATAAAAT
  ATTAATTTAA AAAGTTTTTT GAATCCTCCA ACAACTGGAA CAGGGGTGGG GATGGGGAGT
  GGAGTGGGGG AGGGTGACTG TTGCCTGCCT GTGGATCTAA TTCTCCTAAC TGAGCCACCT
  Y
  GTCTGTCCCA GTGGGAGAGG ATGTGCCTGC CTAGTCCTGC AGTAGCTTGA TGTACCAGGG
  TGGGGGTGTA CTGAGGGTGA TTCTCAGAGG AGAAGGGGAG GGTGGGTAGG AGGAGGGACT
  GTGGGGAGAA TCCAGAGCGG GGGGGGGGGG GGGCTGTGAT CTGGATGCAA AGTGAATAAT
  GGGGGAAAAA AAGTTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362746690	MGP_WTSI_4_106533502	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223520797					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362746690	MGP_WTSI_4_106533502	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106718094 () rs orientation: forward

Symbol	Name	Function Class
Gm69305	predicted gene, 69305	586 bp upstream
Gm69780	predicted gene, 69780	1285 bp upstream
Gm70282	predicted gene, 70282	within coordinates
Rr376973	regulatory region 376973	382 bp downstream
Rr596849	regulatory region 596849	1046 bp distal
Rr596850	regulatory region 596850	701 bp distal
Rr596851	regulatory region 596851	1484 bp proximal
Tssr38192	transcription start site region 38192	1142 bp downstream
Tssr42651	transcription start site region 42651	1508 bp upstream
Tssr42652	transcription start site region 42652	1301 bp upstream
Tssr42653	transcription start site region 42653	1277 bp upstream