rs223477565 SNP Detail

Summary

• ID
  rs223477565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78874523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGCTCAGC GCCGCCTGGG AGGAAGAGCC
  CCCAAGCTCC GGGCTCGCCC AGCGCCTTAC GGTGGCGGAG CCGGGGGGAG CCTGCTCTCC
  TGCCTGGTGC AGGTGGACTA AGGGAcgcgc gggcgggcgg cgccgcccgg gtggggccgc
  Y
  TTAACTTTCT ATATATGCTT TAAGTCGAGT CTGGTAAAAC TGTCTTGAAC TCTACAGTCA
  CTTTCAAGGA ATGCAGCTGA GACCTTCAGA AATAACAGTC AACAGGAAAA TGAAATGGAG
  GTCCCAGCTC AGAGAAATCA CTTTCCATGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320809394	CHEV_3_78771138	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223477565					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78874523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	within coordinates
Gm9762	predicted pseudogene 9762	417 bp upstream
Gm65474	predicted gene, 65474	474 bp downstream
Gm66687	predicted gene, 66687	367 bp upstream
Rr578453	regulatory region 578453	399 bp distal
Rr578454	regulatory region 578454	within coordinates