rs223473184 SNP Detail

Summary

• ID
  rs223473184
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTCATAG ACGCGTTAGC
  TCTTGCCTGT CGAAAACACC GACCCTTCTG AACAGTTCTT TGACTGCAAA ATGAAAGGAA
  CTGTAATAGA AGGTGGCTGT TTCTTCTTTG ACCGGCCAGA AGAGACAGAG CCTGGGCTTT
  GAATCTAAGG CTCATCTCGT TCTGGGGCAC TCACATTTAC ACAAGAGCTG GAAGGAACCA
  S
  TTTGTCTGTT TTGTTCCCCC CTCCCCGCAA GCGTATTTTT TATTTCATTC ATATGAGTGT
  TTTGCTTGTG TGCCTGTGCA CCACACGGAT GCAGTGCCGG TGGATGCCAG CAGAGGGCAC
  TGGATCCAGT CAATCCAGAT TTACAGACCG CTGTGAGCCA CTGTGTGGGT GCTGGGAACT
  GAACCCAGCT CCTCTAGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317079	CHEV_4_129780961	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223473184					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997510 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1738 bp downstream
Rr600439	regulatory region 600439	1149 bp distal
Rr600440	regulatory region 600440	650 bp distal
Rr600441	regulatory region 600441	103 bp proximal
Rr600442	regulatory region 600442	785 bp proximal
Tssr39229	transcription start site region 39229	1169 bp upstream