rs223425764 SNP Detail

Summary

• ID
  rs223425764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167032166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCGGCTC GGCTCGGCGG
  CGGCCGCGGC TGCCTGCGCG AGATCAACAA GTCGGGCTGA GCTTCGGCTC CGCGCTCGCC
  GCGATTCTGT CCCGCACTTC GGAGCGCGGC GAGTGGCACC GAGGCGGGAC GGCGCCACCT
  GCGGGTCGGA AACGCGCGCG GCTTAACCCC TCCGTGCCCG GCCCGGCCCT GGCTCAGGCC
  R
  CGGGGCCCAC CCGGGCTGCT TGACTGCGTC CTGGCCACCA CGAGGCTGAG CGCCTACTGC
  ATGCATGCGC TGCACGTAGG ACGGGCGTGG GAGATACAGT TGCGAAGCCA ACTAGCCTCT
  GGGTCGCCGG GCTCCCTGGA GAGCGACTGT AAACAGAATT GGAAGACTAT GTCAGACAGG
  CTAGAAGCTG GGAGGATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356500172	MGP_WTSI_2_167015746	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223425764					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356500172	MGP_WTSI_2_167015746	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167032166 () rs orientation: forward

Symbol	Name	Function Class
1110018N20Rik	RIKEN cDNA 1110018N20 gene	within coordinates
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1	91 bp upstream
Ptgis	prostaglandin I2 (prostacyclin) synthase	1559 bp downstream
Rr570486	regulatory region 570486	1534 bp distal
Rr570487	regulatory region 570487	611 bp distal
Rr570488	regulatory region 570488	102 bp distal
Rr570489	regulatory region 570489	within coordinates
Rr570490	regulatory region 570490	207 bp proximal
Tssr21792	transcription start site region 21792	570 bp downstream
Tssr21793	transcription start site region 21793	553 bp downstream
Tssr27748	transcription start site region 27748	1609 bp upstream
Tssr27749	transcription start site region 27749	1473 bp upstream
Tssr27750	transcription start site region 27750	1431 bp upstream
Tssr27751	transcription start site region 27751	1410 bp upstream
Tssr27752	transcription start site region 27752	138 bp upstream
Tssr27753	transcription start site region 27753	73 bp upstream
Tssr27754	transcription start site region 27754	41 bp downstream