rs223408623 SNP Detail

Summary

• ID
  rs223408623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATTCTA TTGCTACATC
  ACCTGCACAG CACAATCCAG TTGTCATGGT GTGCCACATA TGAAAAGTCC TATTGAACAA
  TGCATATGCC TGTACTTGTG TAAGATAAAT GAAAAGAAAA AAAATTGTAG AGTAAGCCAG
  TCCACTAGGA GAGATGTACA ATTTGATTCT AAGAGAGGCA ATTTTTTATT TTCTTTCCCT
  R
  TATTGAATGA TATAACGAGA GAAGGGAGCC TGTGAGAAAC TGTGCTTCTT TAATAGGATG
  AAGGAGCGAC ACTCTCTTTT AGAATCTAGA GAAAGTCCAC CGCTCAAAGC TGTGGTAAAA
  TTAACAATAA TTAACAAACT ATAATTATTT CCAGGCCCAC CTTCAAAATA CATTTTATAT
  ATATCAGCAT TTAATGTACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812343	CHEV_6_67486614	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223408623					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	744 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1808 bp distal
Rr631669	regulatory region 631669	1365 bp distal
Rr631670	regulatory region 631670	814 bp distal
Rr631671	regulatory region 631671	544 bp distal
Rr631672	regulatory region 631672	641 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	824 bp upstream
Tssr1872	transcription start site region 1872	1839 bp upstream
Tssr61255	transcription start site region 61255	1875 bp upstream
Tssr61256	transcription start site region 61256	1394 bp upstream
Tssr61257	transcription start site region 61257	923 bp upstream
Tssr61258	transcription start site region 61258	818 bp upstream
Tssr61259	transcription start site region 61259	750 bp upstream