rs223381737 SNP Detail

Summary

• ID
  rs223381737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:51356950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTACAGGA CAGACATTTG
  TCAGACTGGC CCAAGAGAAC AGCTACGAAC ATTGCCTGGA CTCACCATGA TCGCCATGCT
  CACAGTGCTG CTATACCTTG GTGAGGTATA ATGAGGGGGA GTGGATGCTT GTGTTTGTAA
  GGGAACCTAT TCGACAGCCA GGTTTAATTT CACATGGACA TCCTAGGGGA TGCCCTCTGG
  Y
  TCTCAATGTG AAAAAGCTTT GAGAAAAAGG TTTTGTTTTT TTTTTTTCCA GCTCTTATTC
  TGGAACCCAG GACTGCAGTA CAGGCAGGTG AGTGTCTCCA GCCATCCCAG AATTTGATTC
  TTCACTCTGA TGATACAACC TCTAATCTAC TTTCTAGTGT GTAAATTCCT CAAAATGGTG
  ATGGGGGATT GACATTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380379562	MGP_WTSI_10_51200660	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs223381737					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380379562	MGP_WTSI_10_51200660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51356950 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm49339	predicted gene, 49339			Intron
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B			Intron
				Noncoding-Transcript-Variant
Rr431273	regulatory region 431273			186 bp distal
Tssr93232	transcription start site region 93232			599 bp downstream
Tssr93233	transcription start site region 93233			20 bp downstream
Tssr93234	transcription start site region 93234			4 bp downstream
Tssr93235	transcription start site region 93235			278 bp upstream
Tssr93236	transcription start site region 93236			764 bp upstream
Tssr93237	transcription start site region 93237			803 bp upstream
Tssr93238	transcription start site region 93238			827 bp upstream
Tssr93239	transcription start site region 93239			852 bp upstream
Tssr93240	transcription start site region 93240			869 bp upstream
Tssr93241	transcription start site region 93241			891 bp upstream
Tssr93242	transcription start site region 93242			931 bp upstream
Tssr93243	transcription start site region 93243			1724 bp upstream
Tssr93244	transcription start site region 93244			1990 bp upstream
Tssr97553	transcription start site region 97553			411 bp upstream