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rs223375799 SNP Detail
Summary
  • ID
    rs223375799
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:19365497 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACGCCTCCCG GCCCTCCGCG
    CGGCTGGCGG CGGGAAGGGC TGCAGCGGGC TCGGGAAGCC GGGCGGGCGG CGTTAAAGGG
    GAACCCGCCG CCCAGGCGCT CCGCGGCGCG AGAGCTGGCC CGGGCCGCGA GCACGGGCGC
    GGAGCGTAGA GCAGTTCGGC CGCCGGAGCC CTGCCCCCTC CCCTCCCCCG AGCCTCACTC
    Y
    GCTCCGCCGC CGGCGCGAGC CCGGCGTAAT TCACACTTTG CAGCAGCGGA CCCTGCGCCA
    ACCACGGCCG CCGCCACCGT GACGTCACGA CGCCGCGCCG CATGCCCCGC GCCCCGCGCC
    GCCGCCGCGC CCAGGAGCCC GCCGGCTGTC CGGACAGGGC TGCTCGCGTC CGCTGCGCTA
    GGCGCCGCGC CGCGCCGCGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss357153126 MGP_WTSI_3_19211333 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C T C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs223375799 SNP C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C T C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357153126 MGP_WTSI_3_19211333 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:19365497 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
3110037C07Rik RIKEN cDNA 3110037C07 gene Coding-Synonymous
Cpgi13002 CpG island 13002 within coordinates
Gm66414 predicted gene, 66414 304 bp upstream
Pde7a phosphodiesterase 7A 11 bp upstream
Rr573969 regulatory region 573969 22 bp distal
Rr573970 regulatory region 573970 within coordinates
Rr573971 regulatory region 573971 315 bp proximal
Tssr28510 transcription start site region 28510 628 bp downstream
Tssr28511 transcription start site region 28511 474 bp downstream
Tssr28512 transcription start site region 28512 107 bp upstream
Tssr28513 transcription start site region 28513 148 bp upstream
Tssr32696 transcription start site region 32696 70 bp upstream
Tssr32697 transcription start site region 32697 19 bp upstream
Tssr32698 transcription start site region 32698 within coordinates
Tssr32699 transcription start site region 32699 16 bp downstream
Tssr32700 transcription start site region 32700 56 bp downstream
Tssr32701 transcription start site region 32701 859 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory