ACGCCTCCCG GCCCTCCGCG CGGCTGGCGG CGGGAAGGGC TGCAGCGGGC TCGGGAAGCC GGGCGGGCGG CGTTAAAGGG GAACCCGCCG CCCAGGCGCT CCGCGGCGCG AGAGCTGGCC CGGGCCGCGA GCACGGGCGC GGAGCGTAGA GCAGTTCGGC CGCCGGAGCC CTGCCCCCTC CCCTCCCCCG AGCCTCACTC Y GCTCCGCCGC CGGCGCGAGC CCGGCGTAAT TCACACTTTG CAGCAGCGGA CCCTGCGCCA ACCACGGCCG CCGCCACCGT GACGTCACGA CGCCGCGCCG CATGCCCCGC GCCCCGCGCC GCCGCCGCGC CCAGGAGCCC GCCGGCTGTC CGGACAGGGC TGCTCGCGTC CGCTGCGCTA GGCGCCGCGC CGCGCCGCGC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss357153126 | MGP_WTSI_3_19211333 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
||||
rs223375799 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss357153126 | MGP_WTSI_3_19211333 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr3:19365497 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
3110037C07Rik | RIKEN cDNA 3110037C07 gene | Coding-Synonymous | ||||||
Cpgi13002 | CpG island 13002 | within coordinates | ||||||
Gm66414 | predicted gene, 66414 | 304 bp upstream | ||||||
Pde7a | phosphodiesterase 7A | 11 bp upstream | ||||||
Rr573969 | regulatory region 573969 | 22 bp distal | ||||||
Rr573970 | regulatory region 573970 | within coordinates | ||||||
Rr573971 | regulatory region 573971 | 315 bp proximal | ||||||
Tssr28510 | transcription start site region 28510 | 628 bp downstream | ||||||
Tssr28511 | transcription start site region 28511 | 474 bp downstream | ||||||
Tssr28512 | transcription start site region 28512 | 107 bp upstream | ||||||
Tssr28513 | transcription start site region 28513 | 148 bp upstream | ||||||
Tssr32696 | transcription start site region 32696 | 70 bp upstream | ||||||
Tssr32697 | transcription start site region 32697 | 19 bp upstream | ||||||
Tssr32698 | transcription start site region 32698 | within coordinates | ||||||
Tssr32699 | transcription start site region 32699 | 16 bp downstream | ||||||
Tssr32700 | transcription start site region 32700 | 56 bp downstream | ||||||
Tssr32701 | transcription start site region 32701 | 859 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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