rs223375799 SNP Detail

Summary

• ID
  rs223375799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19365497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTCCCG GCCCTCCGCG
  CGGCTGGCGG CGGGAAGGGC TGCAGCGGGC TCGGGAAGCC GGGCGGGCGG CGTTAAAGGG
  GAACCCGCCG CCCAGGCGCT CCGCGGCGCG AGAGCTGGCC CGGGCCGCGA GCACGGGCGC
  GGAGCGTAGA GCAGTTCGGC CGCCGGAGCC CTGCCCCCTC CCCTCCCCCG AGCCTCACTC
  Y
  GCTCCGCCGC CGGCGCGAGC CCGGCGTAAT TCACACTTTG CAGCAGCGGA CCCTGCGCCA
  ACCACGGCCG CCGCCACCGT GACGTCACGA CGCCGCGCCG CATGCCCCGC GCCCCGCGCC
  GCCGCCGCGC CCAGGAGCCC GCCGGCTGTC CGGACAGGGC TGCTCGCGTC CGCTGCGCTA
  GGCGCCGCGC CGCGCCGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357153126	MGP_WTSI_3_19211333	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223375799					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357153126	MGP_WTSI_3_19211333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19365497 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	Coding-Synonymous
Cpgi13002	CpG island 13002	within coordinates
Gm66414	predicted gene, 66414	304 bp upstream
Pde7a	phosphodiesterase 7A	11 bp upstream
Rr573969	regulatory region 573969	22 bp distal
Rr573970	regulatory region 573970	within coordinates
Rr573971	regulatory region 573971	315 bp proximal
Tssr28510	transcription start site region 28510	628 bp downstream
Tssr28511	transcription start site region 28511	474 bp downstream
Tssr28512	transcription start site region 28512	107 bp upstream
Tssr28513	transcription start site region 28513	148 bp upstream
Tssr32696	transcription start site region 32696	70 bp upstream
Tssr32697	transcription start site region 32697	19 bp upstream
Tssr32698	transcription start site region 32698	within coordinates
Tssr32699	transcription start site region 32699	16 bp downstream
Tssr32700	transcription start site region 32700	56 bp downstream
Tssr32701	transcription start site region 32701	859 bp downstream