rs223347929 SNP Detail

Summary

• ID
  rs223347929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127741483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGCTAC CACTCTTGAC
  TCTAAACGTG ATCTCTGAGC TTGACTTCCA GCTGCCAGAC ATCCAGAGTT GTTTTATCCT
  GCATTGGGGT TCTTAGAATG ATCTAAAGTA TTTCTCCTTA CTTTTTCAGG AACCCCCAAG
  AATCTCGAGC CTTCTCGATC TTGGGATTAA CTTAAAATTG CTGTTTTTGA ACCCTTAAAA
  Y
  CCTAGACTCC CAAGCATTGC AGTCACATAA TTCATACTTT CTTTCTTTCT TTCTTTCTTT
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTAA TCAGAATTGG
  ATCCGAAGAA AGCTGGTGGC AGCTCTCCTC TCCCATCTGT CCTCTCTGAG ATGTAAGAAT
  GGGAGCTCTC CTTACCGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958539	CHEV_3_127650752	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223347929					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127741483 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	1187 bp upstream
Rr584909	regulatory region 584909	600 bp proximal
Rr584910	regulatory region 584910	1039 bp proximal
Rr584911	regulatory region 584911	1266 bp proximal