rs223320109 SNP Detail

Summary

• ID
  rs223320109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151865894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTTGT TTTCAGTAAA
  CAACACAATC TCTGGGTGCA ACACTACTCT TCGTTGCTGT GGCATCTCTC CATATCAGGA
  GTTTGAACAG CTCTAGATGC TGTCCTAGTC TTACAGAATC TTATTCTGGA CATCTCCTGA
  AGTCACGCAG CAAGTCAGGA ACCCATCTTT CTCCTCACCC CTCTCTGAAG CCTGGGAAGT
  R
  GACTCAGGAA TGCTCACAGT ACCCTGGAAT CACTCACTAC GCTGTGTCCC GGGCCCAGAG
  GAAGAAGGCT GCCAAGCACG AAGCTTTTCA ACACCTGATA GTACTGGCTC ACTCGTGTTT
  CTAATGTTAC CTGGTCAGGG AGGGGGTGCT TGCTTTATTC CTGGTGGACA GCTACCTCTG
  TCTGCCCCGT GTCTGCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320561841	CHEV_2_151849710	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223320109					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151865894 () rs orientation: forward

Symbol	Name	Function Class
Gm75398	predicted gene, 75398	within coordinates
Gm75402	predicted gene, 75402	within coordinates
Rr374074	regulatory region 374074	within coordinates
Rr567261	regulatory region 567261	1757 bp distal
Rr567262	regulatory region 567262	1561 bp distal
Rr567263	regulatory region 567263	430 bp proximal
Rr567264	regulatory region 567264	627 bp proximal