rs223234787 SNP Detail

Summary

• ID
  rs223234787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132485242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCCTTGAG AGCCTGAGGG CTGAATCACT
  CCTTAGCAAG TTACCTAACC TGAGAAGACA GAGAGAGCTG TGACTCAAGT CTGAGGAAGG
  CGATGAGAGG TTTCTGGAAG GAGATGACAT AAACTTACTC CCTTTGTTTT GATTTTTTTT
  Y
  TCCCTTGCAG TTAGGGATGG TTTGGGCTTT GTCTTTTTGT GGTTTATTTA TTTCTATTTG
  TTCTTTTTGT TTTTTTGCTC CTGTTGTTGT CCGTACAGGG ATGAAACCCA GATCTTCACT
  CAAGCAAGGC AAACTGTCTA GCTCACCGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336234	CHEV_4_132313846	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223234787					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132485242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	600 bp distal
Gm70165	predicted gene, 70165	271 bp upstream
Rr601063	regulatory region 601063	690 bp distal
Rr601064	regulatory region 601064	416 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	684 bp upstream
Tssr43702	transcription start site region 43702	824 bp upstream
Tssr43703	transcription start site region 43703	779 bp upstream
Tssr43704	transcription start site region 43704	744 bp upstream
Tssr43705	transcription start site region 43705	691 bp upstream
Tssr43706	transcription start site region 43706	672 bp upstream