rs223227251 SNP Detail

Summary

• ID
  rs223227251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5497000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAAGGA CCACCCTACA
  GTTTTATCCA CTTTCTTCTT AGCGAACAGC TCAAGTTTAG AAACTGCCTA AATAGGCTTA
  TTATTAATGT GGTGGAAAAT CCCAGTTCAC TTCTCTCCTG TAACACTTTC TACCTGTTAA
  TTAAATGCAA ACTAAAGAGC GATTTGCTGA GGGTTTGGCT GGCCCTGTAG TCCCCCTTCC
  Y
  TGTCATTCCC CTCTTTCTCT AAGGCCTTCT AGTTTGCTCT TGACCGCCCT CCACTCCCCA
  GTCTGCTCCA AAAGCTCTTT CTTCATTGCG GCTGCCCTCC TTCCAAAAAG CAGCCTTTGT
  CACTAGCAGG CACCAGTAGC ATATTTTAGT TATTTGGGCT CTTTCATTTC CCAGAGGCTC
  AGTGCATCCT ACCCTACTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321729292	CHEV_6_5447000	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223227251					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5497000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17131	CpG island 17131	360 bp distal
Pdk4	pyruvate dehydrogenase kinase, isoenzyme 4	722 bp upstream
Rr378865	regulatory region 378865	within coordinates
Rr626152	regulatory region 626152	201 bp distal
Rr626153	regulatory region 626153	1716 bp proximal
Tssr59753	transcription start site region 59753	1148 bp upstream
Tssr59754	transcription start site region 59754	1119 bp upstream
Tssr59755	transcription start site region 59755	1068 bp upstream
Tssr59756	transcription start site region 59756	710 bp upstream
Tssr59757	transcription start site region 59757	684 bp upstream