rs223222321 SNP Detail

Summary

• ID
  rs223222321
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107426578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTCCCA GTCCAGAAGC
  AGCAGCCTGG GAACAAAGGG CTGGGGCTTG AGTGTGCTAT TCAACACAAA CAATACAGAC
  CACCCACACC ACACATGCCT CCCTCCCTAG CTACCAGGCA TAGACTGAGT GTGTTCTCCA
  GTCTTGAAGA TAAGGAATCT ATCAGTTCAT AGACAGGCTA CAGGTGGGCA GCTTTGAGGA
  S
  AGAAGGAGGT AGAGGCTGGG GCTTGGGAGC GATTGTGCTG TGCACAGGTG TGGGGGAAGG
  GCACTGAGCT GCTGGAGAAT ATAACTTGAT GTCTTTGGGC TGAGGGTATA CAGGCAGGAG
  GGCTGAGGGC TGAGCTAGTC CCTGAAGAAG ACGCATGGCC TAATGAAAGA TGTGCTTCTC
  CGAGATGGGG AAGGTCAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321249118	CHEV_4_107241986	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223222321					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107426578 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	1037 bp distal
Rr597018	regulatory region 597018	1036 bp proximal