rs223208024 SNP Detail

Summary

• ID
  rs223208024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6215246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCACCT GTGCCAAGCA
  CACGTTTGGT TTCTATTAAT CTAAGTTCAT CTTACTTTCT CGTTATTTGT TTGTTGTTGC
  TGTTGTTGTT GAAGACAGGG TTTTTTAGTT TAACAGCTCG TGTCTATCCT GGAATTCACT
  TTATAGAGCA AGCTGGCCCC TGCCTCCAAT GCACTGGGAT TAAACCTGTG TGCCACAATG
  Y
  CCAGCTTCTC CTTACCTTCT CTTTATCCTG ACTTTCTCAT CCACTTACAG TTGGTTTTGT
  TATATCCTAT TGGAAGGTAT TCTATATCTA TATATGTCAG CCATCCGAAC TGAAGAGAGG
  TGACTGTCAG TGAATAAATA ACAAAGAAGG CAGGTTTCAA AGGGTAAAGG TGACAGGAAT
  GTTTCAGTTT CCTTGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321731367	CHEV_6_6165246	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223208024					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6215246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17135	CpG island 17135	1414 bp proximal
Rr378879	regulatory region 378879	1787 bp downstream
Rr626224	regulatory region 626224	1981 bp distal
Rr626225	regulatory region 626225	956 bp proximal
Rr626226	regulatory region 626226	1862 bp proximal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron
Tssr59765	transcription start site region 59765	104 bp downstream
Tssr59766	transcription start site region 59766	1777 bp downstream
Tssr59767	transcription start site region 59767	1882 bp downstream