rs223173821 SNP Detail

Summary

• ID
  rs223173821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6199158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATGAAT GAAGAAAAGA
  TACTGTGCAA TCTCTGCTGT GTCATGAGGA AAGCTGGAGA ATCAGCCAAG ACCAAAGAGC
  CACCAACAAT ACCCTCAGCT GCCTAGAATG GCTTGGTAAG AAGCCAATAT AATACTCAAA
  GCAAGTCAAC AGCATCAGGC TGGGAGAACC AAAACAATTT CTCCAGATAC TGTCAGCTTA
  W
  CTGCATGTGG TAGAGGGCAT CTATTCGGCC CCAGCTGTCA TGAACATGGT AACTAGTGAC
  GTTCCACTTG CTCACTTACA CACTTCTCTC ACCTATAAAC CCAGGATCAC TCAGGCCTAC
  TGCCAGGCAC TGCCAGAACC CTCTCCAAGG AATAAGGACA TACTTAGTGG TGAGTGACCG
  GCATGTATTG TATGAGGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321731304	CHEV_6_6149158	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223173821					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6199158 () rs orientation: forward

Symbol	Name	Function Class
Rr378877	regulatory region 378877	629 bp downstream
Rr626219	regulatory region 626219	37 bp proximal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron