rs223167876 SNP Detail

Summary

• ID
  rs223167876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189858544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GCTCTGCATG CTTTTCCACT
  R
  CTTATTTAGA TTTAGTTTAC ATTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320192335	CHEV_1_191950226	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223167876					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189858544 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	within coordinates
Prox1	prospero homeobox 1	Intron
Rr425914	regulatory region 425914	981 bp distal
Rr425915	regulatory region 425915	680 bp distal
Rr425916	regulatory region 425916	930 bp proximal