rs223142879 SNP Detail

Summary

• ID
  rs223142879
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51326111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATATAGCA TAGTTTTCTT TCAGGGCTTA
  CCCATCCAGT CCCTTTGCTC CCCTTTCCCT CCTATTCTCC CTTATAATGC TGGAGGTTGA
  ACCCTGTGCT AAATACAAGC AGAGATGTGC TTCCAACTCT CCCATTATAC TGACTGGGCt
  S
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgAGAA AAATCAAGAG TCCCAAAAAT
  ACACTTAACC TGAAACAAAG GAAAGCCTCA GACTATGCTT CACCCTTAGG AATAGAGaca
  tggtggctca caaccatcca taacaagatc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762673	CHEV_3_51222612	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223142879					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51326111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13139	CpG island 13139			1727 bp distal
Gm50622	predicted gene, 50622			within coordinates
Naa15	N(alpha)-acetyltransferase 15, NatA auxiliary subunit			Intron
				Noncoding-Transcript-Variant
Rr576316	regulatory region 576316			1290 bp distal
Rr576317	regulatory region 576317			962 bp distal
Tssr29056	transcription start site region 29056			296 bp downstream