rs223142651 SNP Detail

Summary

• ID
  rs223142651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54505791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGCCC CTCAGTCACT
  GGTGAACTTA TGGAGTCTAC ACCATGTATC TATTGATGAG TGGCTGATTG CCACGCTACT
  TGGCAACTTC AAACAAGTAG CCTTGCTTCA TCTCTGTCCT TTGGGTGTAA GGGCTATGGG
  TACAGCTGCG GTTCACTGTA TTACAGTTCC TCACAAGATC ACTCTCAAGG CTGGCTGATC
  Y
  TGCCAGCTGA GGCTGCAACC GCTTCAGGGA TACACTAGAG GAATAGCTAG TTCCAAAGGC
  AATCCCTGGA TACTGTCAAT CCTTGGAAGA TCCTGCTGGG AGAGGCAACA GCTCCTGGCC
  TCACATGACT ACAGCTGGCT CTGCCAGGCA TAATGGGAGA GAACAGAGGA TGCCCTGGGC
  ACAAAGAGGC TTCAGCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772142	CHEV_3_54402292	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223142651					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54505791 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	226 bp distal