rs223125839 SNP Detail

Summary

• ID
  rs223125839
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15187360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTGAAC TGTTCTGACT
  TTAAATTTTA TTATCTGCAG TTAGTTCACT GTGCCCTCTC CAAGGCCTGC TTATGTGTCT
  TTATGGTCAG TCCTCCTGTC CGACAAGTTT GAAAACAAAG TATCTCGGAG AGTGTATGGA
  GGGGTTTAAC GATTACCCTG TTGGTTTTCA TGGGAAGCAA AGATCTGTGG TTCACGGAGA
  K
  TACGGTATAG GAGGGTTACA GGTATCTGTT TAGAAATGTG GGCTTAGTTT CAAAACAAGT
  TGTTTGGGTT TTCTTTTTTT CCCAACCATT GTATAATTCT CAAAATATGC CCATGCCTTA
  TTTTAAAGAT CACTAAAATT ATATGCATTG GAATAACTAA TACTCTTTGT AAAAGGTGGG
  CAGATAATGT GTTTACTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367474024	MGP_WTSI_6_15137361	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223125839					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367474024	MGP_WTSI_6_15137361	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15187360 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			within coordinates
Rr626648	regulatory region 626648			1845 bp distal
Rr626649	regulatory region 626649			954 bp distal
Rr626650	regulatory region 626650			within coordinates
Rr626651	regulatory region 626651			579 bp proximal
Tssr54979	transcription start site region 54979			1968 bp downstream
Tssr54980	transcription start site region 54980			1909 bp downstream
Tssr54981	transcription start site region 54981			1841 bp downstream
Tssr54982	transcription start site region 54982			1766 bp downstream
Tssr54983	transcription start site region 54983			1735 bp downstream
Tssr54984	transcription start site region 54984			1706 bp downstream
Tssr54985	transcription start site region 54985			1696 bp downstream
Tssr54986	transcription start site region 54986			1502 bp downstream
Tssr54987	transcription start site region 54987			517 bp downstream
Tssr54988	transcription start site region 54988			465 bp downstream
Tssr54989	transcription start site region 54989			448 bp downstream