rs223117678 SNP Detail

Summary

• ID
  rs223117678
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145885347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGCAGG TGTGTGTGAA
  GTACGGCTCT GGCCAAATGC AAGTGTGTGT GGCTTGTGGA TGGTCCCCTA GGCAGGAACA
  GAGACAAGGG AGACCGATCC AGTCATAGTG AGGCCGGGGA GAGCAGCAGC CACAATGTGG
  GGCCATGTAG TCTAAGAGCA GCTACACTTA CAGATCAGCC TCTCTTGTCC CGTCCCCCCC
  S
  CAACCCCCAC CCCCGCACTG TACGTTCCAA ACACTCATTC GCTCGCTCGC TCACTCACTC
  ACTCACTCCT CAGTCCCTGA GTTCCTTTCT TGGTGTTGAC ACACAGGAAA GGCATCTCAG
  ACTGGCTTCT GGCAGGACGG TGTACCTTGA AACAGAGGAG CACAAGTGGG ACCTCTCAGT
  GTGGCATTTA ACTTTGCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss360111067	MGP_WTSI_3_145842556	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223117678					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360111067	MGP_WTSI_3_145842556	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145885347 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mcoln2	mucolipin 2			Intron
				Noncoding-Transcript-Variant
Rr398114	regulatory region 398114			1474 bp downstream
Rr586952	regulatory region 586952			949 bp distal
Rr586953	regulatory region 586953			1711 bp distal
Rr586954	regulatory region 586954			1485 bp distal
Rr586955	regulatory region 586955			1218 bp distal
Rr586956	regulatory region 586956			within coordinates
Rr586957	regulatory region 586957			819 bp proximal
Rr586958	regulatory region 586958			1480 bp proximal
Rr586959	regulatory region 586959			1570 bp proximal