rs223089899 SNP Detail

Summary

• ID
  rs223089899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175795247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTCTTA
  GGGTGCCAGA GAGCTCAGCT TCTTGGTAGG CAGCCTTAGG CATCTTTGAG CACCTTCAGT
  TAACCTCCCC ACCCCTCCTT AGCTGTCTAG TTGCTCAGAC ACCTTCCAAA CAAAATTTCC
  AAGCTTAACT CAGATACACT GGTGGAGACT ATAAAATGAG AAAGATCATG CTGTCTGAAG
  Y
  GTCTTCGGGA CATCTCATAC AAACTTAATG GAGTTATACT CCCATGTCCT GAGATTTTTT
  TCTTGGTTCC ACACTATCAA TGAGTTAATT TCCTTTTGAC ATGCTTTGAA TGTTTTTGTA
  TTGGAACTCT GCTTCTTTCT AGAGATCAGT GTTTTACTAA AACTGTTGCC TATAAAATGA
  AGTTATTTAA TAATGTCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320153317	CHEV_1_177897812	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223089899					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175795247 () rs orientation: forward

Symbol	Name	Function Class
Pld5	phospholipase D family member 5	Intron
Rr423868	regulatory region 423868	1046 bp distal