rs223088085 SNP Detail

Summary

• ID
  rs223088085
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121516616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATTCACTC AAACCCACTG CGGGCTTCCT CAACGTGAGA
  ATCATCCTTC CTGGAACCCC CGTGGCTACA GAAGTCACGC TCAAATTCTC TCAGGCTTCA
  W
  GTTGCAGTTC CTCGGTCACC TCGGGAACGG GAGTGGGGTG CCAAGTGGCC TTTAGACCTA
  ATCCAGGGCC CTTGTCCATG GCAGACACGT GCATTTACT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320905163	CHEV_3_121425885	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223088085					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121516616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13760	CpG island 13760	within coordinates
F3	coagulation factor III, tissue factor	570 bp upstream
Gm43823	predicted gene 43823	within coordinates
Gm64338	predicted gene, 64338	within coordinates
Rr584147	regulatory region 584147	1873 bp distal
Rr584148	regulatory region 584148	1048 bp distal
Rr584149	regulatory region 584149	within coordinates
Rr584150	regulatory region 584150	222 bp distal
Rr584151	regulatory region 584151	537 bp proximal
Rr584152	regulatory region 584152	581 bp proximal
Rr584153	regulatory region 584153	753 bp proximal
Rr584154	regulatory region 584154	765 bp proximal
Tssr31453	transcription start site region 31453	548 bp upstream
Tssr31454	transcription start site region 31454	589 bp upstream
Tssr31455	transcription start site region 31455	613 bp upstream
Tssr31456	transcription start site region 31456	634 bp upstream
Tssr31457	transcription start site region 31457	1844 bp upstream
Tssr35426	transcription start site region 35426	428 bp downstream